Bioconductor QuasR Error

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QuasR qQCReport QuasR error Error in .normarg_totalsize(totalsize)

5.0 years ago A.Singh • 0

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quasR quasr error alignmentparameters quasr

6.1 years ago Amer Ghalawinji • 0

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quasr quasr error

7.9 years ago jlncrnt ▴ 10

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quasr quasr error paired-end reads rnaseq

8.0 years ago guillaume.dachy • 0

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quasr error

updated 8.9 years ago by Hotz, Hans-Rudolf ▴ 400 • written 8.9 years ago by ezgi_can00 • 0

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quasr error

8.9 years ago Paul Ríos • 0

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quasr error

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by maedakus ▴ 10

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quasr error

updated 9.0 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.0 years ago by tarek.mohamed ▴ 10

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QuasR Error

9.0 years ago tarek.mohamed ▴ 10

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

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C: How does edgeR cpm function calculate log(CPM) values?

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

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